PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001055.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 181aa    MW: 20311.7 Da    PI: 7.1802
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001055.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-18755254
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                             +++GVr+++ +g+Wv+eIr+p        +r++lg++ tae+Aa+a+++a++ + 
  Itr_sc001055.1_g00004.1  7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTYETAEDAARAYDEAARLMC 55
                             69******9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.17E-31666No hitNo description
SMARTSM003801.8E-38770IPR001471AP2/ERF domain
PROSITE profilePS5103220.389764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-33765IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-20766IPR016177DNA-binding domain
PfamPF008474.3E-11756IPR001471AP2/ERF domain
PRINTSPR003672.0E-10819IPR001471AP2/ERF domain
PRINTSPR003672.0E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTYETA EDAARAYDEA ARLMCGQMAR  60
TNFPHNAGDH QASSSRKFLS ANLIAKLQRC QMTSHSVAKR PTAQARAPEQ EYPPPAVSRG  120
DGAPAKNLEQ SGAETPENWV GCQGQEGSGQ EFKALEDHHI QQMIEELLDY GSIELCSVLQ  180
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-15864663ATERF1
3gcc_A2e-15864663ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1909810.0EU190981.1 Ipomoea batatas AP/ERF transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771954.16e-79PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_016462615.16e-79PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-63ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLE6Y3691e-133E6Y369_IPOBA; AP/ERF transcription factor
STRINGSolyc06g068360.2.18e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-50ERF family protein